Poster Presentation The 42nd Lorne Conference on Protein Structure and Function 2017

Development and application of an NMR-based activity and inhibition assay for mycobacterial isocitrate lyase (#109)

Ram Bhusal 1 , Krunal Patel 1 , Brooke Kwai 1 , Ghader Bashiri 2 , Johannes Reynisson 1 , Jonathan Sperry 1 , Ivanhoe Leung 1
  1. School of Chemical Sciences, The University of Auckland, Auckland, New Zealand
  2. School of Biological Sciences, The University of Auckland, Auckland, New Zealand

Tuberculosis (TB) is an infectious disease that is caused by Mycobacterium tuberculosis. Fatty acids and lipids are thought to be important sources of carbon and energy for M. tuberculosis during infection, in particularly when the bacteria are in the latent phase. The enzyme isocitrate lyase (ICL), which catalyses the formation of succinate and glyoxylate from isocitrate, is the first enzyme in mycobacterial glyoxylate cycle. ICL is important for the survival of latent M. tuberculosis as it allows the bacteria to survive with fatty acids as its sole carbon source. Whilst ICL is crucial for the survival of M. tuberculosis, it is not present in humans. As such, ICL is an excellent therapeutic target for the development of new anti-TB treatments.

The development of ICL inhibitors for potential anti-TB treatments is hampered by a lack of reliable and efficient in vitro assays for ICL activity. Reported methods included radioactive assays using 14C-labelled isocitrate,1 which is tedious to set up and is potentially dangerous, or by the use of a chemically-coupled assay with detection by UV/Vis spectroscopy.2 Herein, we report the development of an NMR-based activity assay that allows the detection of isocitrate consumption and succinate formation in real time. This method was demonstrated by using existing ICL inhibitors, and exemplified by our inhibitor discovery work in tandem with virtual high-throughput screening.

  1. Dimroth, P.; Mayer, K.; Eggerer, H. On the mechanism of action of isocitrate lyase. J. Biochem. 1975, 51, 267–273.
  2. Liu, Y.; Zhou, S.; Deng, Q.; Li, X.; Meng, J.; Guan, Y.; Li, C.; Xiao, C. Identification of a novel inhibitor of isocitrate lyase as a potent antitubercular agent against both active and non-replicating Mycobacterium tuberculosis. Tuberculosis 2016, 97, 38–46.