Poster Presentation The 42nd Lorne Conference on Protein Structure and Function 2017

Characterizing the non-ribosomal peptide synthetase that makes the Glycopeptide Antibiotics (#232)

Melanie Schoppet 1 2 , Max J. Cryle 1 2
  1. EMBL Australia, Monash University, Melbourne, Victoria, Australia
  2. Biochemistry and Molecular Biology , Monash University, Melbourne, Victoria, Australia

Glycopeptide antibiotics (GPAs) such as teicoplanin and vancomycin are of great pharmacological relevance. These bioactive molecules are produced in vivo by a multi-enzyme complex known as a non-ribosomal peptide synthetase (NRPS)(1)(2)(3)(4). The typical linear NRPS consists of repeating modules that can be further divided into different catalytically active domains, with each module incorporating one amino acid into the growing peptide chain. The key domains present in typical NRPS modules are adenylation (A)-domains, peptidyl-carrier (PCP)-domains, condensation (C)-domains and a thioesterase (TE)-domain, of which the latter is only present within terminating NRPS modules(5)(6). After the NRPS-catalysed formation of the linear peptide intermediate GPAs undergo further maturation processes, including the introduction of oxidative crosslinks through the action of tailoring enzymes (P450 monooxygenases) to obtain their final biological activity(4). Within NRPS biosynthesis, there is still much debate over the exact origins of the selectivity of NRPS machineries – it is essential to answer these questions if we are to ever realise the goal of reengineering these systems to produce novel compounds.

Due to the importance of the final stages in peptide biosynthesis, we have concentrated on characterising the activity of the final module of the teicoplanin NRPS (Tcp12). We have developed assays to assess the activity of both A-domains (via a novel spectroscopic coupled enzyme assay)(7) and C-domains, where we have applied Tcp12. Our results reveal that the selectivity of peptide bond formation during NRPS biosynthesis is largely enforced by monomer selection mediated by A-domains, with C-domains displaying much lower selectivity. These findings greatly improve the prospects for producing new GPAs by NRPS redesign centred on mutations to A-domains.

  1. M. Winn, J. K. Fyans, Y. Zhuo and J. Micklefield, Recent advances in engineering nonribosomal peptide assembly lines, Nat. Prod. Rep., 33, 317-347 (2016)
  2. Richard H. Baltz, Combinatorial Biosynthesis of Cyclic Lipopeptide Antibiotics: A Model for Synthetic Biology To Accelerate the Evolution of Secondary Metabolite Biosynthetic Pathways, Synth. Biol., 3 (10), 748-758, (2014)
  3. Madeleine Peschke, Melanie Gonsior, Roderich D. Süssmuth, Max J. Cryle, Understanding the crucial interactions between Cytochrome P450s and non-ribosomal peptide synthetases during glycopeptide antibiotic biosynthesis, Structural Biology, 41, 46-53, (2016)
  4. Rashed S. Al Toma, Clara Brieke, Max J. Cryle, Roderich D. Süssmuth, Structural aspects of phenylglycines, their biosynthesis and occurrence in peptide natural products, Nat. Prod. Rep., 32, 1207-1235, (2015)
  5. Jennifer A. E. Payne, Melanie Schoppet, Mathias Henning Hansen, Max J. Cryle, Diversity of nature’s assembly lines – recent discoveries in non-ribosomal peptide synthesis, Mol. BioSyst., (2016), DOI: 10.1039/c6mb00675b
  6. Gene H. Hur, Christopher R. Vickery, Michael D. Burkart, Explorations of catalytic domains in non-ribosomal peptide synthetase enzymology, Nat. Prod. Rep., 29, 1074-1098, (2012)
  7. Tiia Kittilä, Melanie Schoppet, Max J. Cryle, Online Pyrophosphate Assay for Analyzing Adenylation domains of Nonribosomal Peptide Synthetases, ChemBiochem, 17(7), 576-584 (2016)